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Species belonging to selected taxon:
Cynodon dactylon
,
Eragrostis curvula
,
Panicum virgatum
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Cenchrus ciliaris
,
Zea mays
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST001784
species:
Panicum virgatum
miRNA family:
MIR437
source:
miRNEST
Taxonomy by NCBI:
Panicum virgatum
Panicum
Paniceae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AAAGTTCGAGAAGTTTGACTT
miRNA*
GTCAAACTTCTATAACAAATTTA
mismatches:
3
bulges:
2
View larger
pre-miRNA
AGACGTGTTAGCTTTGTCCTAA
GTCAAACTTCTATAACAAATTTA
CCGAAAAAGTATTAATGTCTAAAGTACCGAATAAATGTATTATCAAGCCATACAC
ATATTTCATGGTGGATTTGTAACGAAACTAATTTGATGTTGTCGATGTTGGTGCATTTTTTCTATAAACTTGGTG
AAAGTTCGAGAAGTTTGACTT
GGGA
TAAAGCAAAAGCATC
dot-bracket secondary structure
....((.((.((((((((((((
(((((((((((..(((...((((
((((.....(((........((.(((((((....(((...(((((.(((((....
.......))))).((((.((......)).))))))))).))).....))))))).))......)))...))))))
)).)))..)))))))))))))
))))
)))))).)).))...
SIMILARITIES
miRBase
sbi-MIR437p
:
5e-20
PMRD
sbi-miR437p
:
5e-20
microPC
miR437
:
0.00000001
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record